IL_6XQD_084

3D structure

PDB id

6XQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UUC-mRNA, and deacylated P-site tRNA at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

6XQD|1|1A|G|2165

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XQD_084 not in the Motif Atlas

Homologous match to IL_3U4M_003

Geometric discrepancy: 0.363

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

6XQD|1|1A|G|2124
6XQD|1|1A|G|2125
6XQD|1|1A|A|2126
6XQD|1|1A|G|2127
*
6XQD|1|1A|C|2161
6XQD|1|1A|G|2162
6XQD|1|1A|C|2163
6XQD|1|1A|C|2164
6XQD|1|1A|G|2165
6XQD|1|1A|G|2166
6XQD|1|1A|U|2167
6XQD|1|1A|G|2168
6XQD|1|1A|A|2169
6XQD|1|1A|A|2170
6XQD|1|1A|A|2171
6XQD|1|1A|U|2172
6XQD|1|1A|A|2173
6XQD|1|1A|C|2174

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains