IL_6XQD_162
3D structure
- PDB id
- 6XQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UUC-mRNA, and deacylated P-site tRNA at 2.80A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- UACAAAG*CAAAAAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XQD_162 not in the Motif Atlas
- Homologous match to IL_4LFB_051
- Geometric discrepancy: 0.1006
- The information below is about IL_4LFB_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_09129.2
- Basepair signature
- cWW-L-R-tWH-L-R-L-tWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
6XQD|1|1a|U|1247
6XQD|1|1a|A|1248
6XQD|1|1a|C|1249
6XQD|1|1a|A|1250
6XQD|1|1a|A|1251
6XQD|1|1a|A|1252
6XQD|1|1a|G|1253
*
6XQD|1|1a|C|1284
6XQD|1|1a|A|1285
6XQD|1|1a|A|1286
6XQD|1|1a|A|1287
6XQD|1|1a|A|1288
6XQD|1|1a|A|1289
6XQD|1|1a|G|1290
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1g
- 30S ribosomal protein S7
- Chain 1i
- 30S ribosomal protein S9
- Chain 1j
- 30S ribosomal protein S10
- Chain 1n
- 30S ribosomal protein S14 type Z
- Chain 1u
- 30S ribosomal protein Thx
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