3D structure

PDB id
6XQD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UUC-mRNA, and deacylated P-site tRNA at 2.80A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.8 Å

Loop

Sequence
CGAAU*AUAG
Length
9 nucleotides
Bulged bases
6XQD|1|2A|A|283
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6XQD_184 not in the Motif Atlas
Homologous match to IL_7RQB_011
Geometric discrepancy: 0.1015
The information below is about IL_7RQB_011
Detailed Annotation
tSH-tHW
Broad Annotation
No text annotation
Motif group
IL_04059.1
Basepair signature
cWW-tWH-tHS-cWW
Number of instances in this motif group
13

Unit IDs

6XQD|1|2A|C|280
6XQD|1|2A|G|281
6XQD|1|2A|A|282
6XQD|1|2A|A|283
6XQD|1|2A|U|284
*
6XQD|1|2A|A|357
6XQD|1|2A|U|358
6XQD|1|2A|A|359
6XQD|1|2A|G|360

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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