IL_6XQD_253

3D structure

PDB id

6XQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UUC-mRNA, and deacylated P-site tRNA at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

6XQD|1|2A|A|2119

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XQD_253 not in the Motif Atlas

Homologous match to IL_3U4M_002

Geometric discrepancy: 0.3951

The information below is about IL_3U4M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

6XQD|1|2A|G|2110
6XQD|1|2A|C|2111
6XQD|1|2A|G|2112
6XQD|1|2A|U|2113
6XQD|1|2A|A|2114
6XQD|1|2A|G|2115
6XQD|1|2A|G|2116
6XQD|1|2A|A|2117
6XQD|1|2A|U|2118
6XQD|1|2A|A|2119
6XQD|1|2A|G|2120
*
6XQD|1|2A|C|2178
6XQD|1|2A|C|2179

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains