IL_6XQD_326

3D structure

PDB id

6XQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UUC-mRNA, and deacylated P-site tRNA at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GG*UCAGC

Length

7 nucleotides

Bulged bases

6XQD|1|2a|C|1200, 6XQD|1|2a|A|1201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XQD_326 not in the Motif Atlas

Homologous match to IL_4LFB_045

Geometric discrepancy: 0.1135

The information below is about IL_4LFB_045

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

6XQD|1|2a|G|1057
6XQD|1|2a|G|1058
*
6XQD|1|2a|U|1199
6XQD|1|2a|C|1200
6XQD|1|2a|A|1201
6XQD|1|2a|G|1202
6XQD|1|2a|C|1203

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2c

30S ribosomal protein S3

Chain 2j

30S ribosomal protein S10

Chain 2n

30S ribosomal protein S14 type Z