IL_6XQE_013

3D structure

PDB id

6XQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UAA-mRNA, and deacylated P-site tRNA at 3.00A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAAC*GAGUGAAAUAGAGC

Length

18 nucleotides

Bulged bases

6XQE|1|1A|U|504, 6XQE|1|1A|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XQE_013 not in the Motif Atlas

Geometric match to IL_7RQB_014

Geometric discrepancy: 0.0807

The information below is about IL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.6

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

6XQE|1|1A|G|481
6XQE|1|1A|A|482
6XQE|1|1A|A|483
6XQE|1|1A|C|484
*
6XQE|1|1A|G|496
6XQE|1|1A|A|497
6XQE|1|1A|G|498
6XQE|1|1A|U|499
6XQE|1|1A|G|500
6XQE|1|1A|A|501
6XQE|1|1A|A|502
6XQE|1|1A|A|503
6XQE|1|1A|U|504
6XQE|1|1A|A|505
6XQE|1|1A|G|506
6XQE|1|1A|A|507
6XQE|1|1A|G|508
6XQE|1|1A|C|509

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1W

50S ribosomal protein L22

Chain 1Y

50S ribosomal protein L24