3D structure

PDB id
6XQE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UAA-mRNA, and deacylated P-site tRNA at 3.00A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
CGAUGAAG*UGGAG
Length
13 nucleotides
Bulged bases
6XQE|1|1A|U|1211
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6XQE_044 not in the Motif Atlas
Homologous match to IL_7RQB_047
Geometric discrepancy: 0.071
The information below is about IL_7RQB_047
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_70923.2
Basepair signature
cWW-tSS-tSH-L-tHS-tHS-cWW
Number of instances in this motif group
28

Unit IDs

6XQE|1|1A|C|1208
6XQE|1|1A|G|1209
6XQE|1|1A|A|1210
6XQE|1|1A|U|1211
6XQE|1|1A|G|1212
6XQE|1|1A|A|1213
6XQE|1|1A|A|1214
6XQE|1|1A|G|1215
*
6XQE|1|1A|U|1234
6XQE|1|1A|G|1235
6XQE|1|1A|G|1236
6XQE|1|1A|A|1237
6XQE|1|1A|G|1238

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 1U
50S ribosomal protein L20

Coloring options:


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