IL_6XQE_133

3D structure

PDB id

6XQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UAA-mRNA, and deacylated P-site tRNA at 3.00A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

G(PSU)GCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

6XQE|1|1a|A|532, 6XQE|1|1a|U|534, 6XQE|1|1a|A|535

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XQE_133 not in the Motif Atlas

Homologous match to IL_4LFB_021

Geometric discrepancy: 0.1283

The information below is about IL_4LFB_021

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_52042.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6XQE|1|1a|G|515
6XQE|1|1a|PSU|516
6XQE|1|1a|G|517
6XQE|1|1a|C|518
6XQE|1|1a|C|519
6XQE|1|1a|A|520
6XQE|1|1a|G|521
*
6XQE|1|1a|C|528
6XQE|1|1a|G|529
6XQE|1|1a|G|530
6XQE|1|1a|U|531
6XQE|1|1a|A|532
6XQE|1|1a|A|533
6XQE|1|1a|U|534
6XQE|1|1a|A|535
6XQE|1|1a|C|536

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1c

30S ribosomal protein S3

Chain 1d

30S ribosomal protein S4

Chain 1l

30S ribosomal protein S12

Chain 1v

mRNA