IL_6XQE_182

3D structure

PDB id

6XQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UAA-mRNA, and deacylated P-site tRNA at 3.00A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAAU*AUAG

Length

9 nucleotides

Bulged bases

6XQE|1|2A|A|283

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XQE_182 not in the Motif Atlas

Homologous match to IL_7RQB_011

Geometric discrepancy: 0.1589

The information below is about IL_7RQB_011

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6XQE|1|2A|C|280
6XQE|1|2A|G|281
6XQE|1|2A|A|282
6XQE|1|2A|A|283
6XQE|1|2A|U|284
*
6XQE|1|2A|A|357
6XQE|1|2A|U|358
6XQE|1|2A|A|359
6XQE|1|2A|G|360

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains