IL_6XQE_189

3D structure

PDB id

6XQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UAA-mRNA, and deacylated P-site tRNA at 3.00A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6XQE|1|2A|G|801, 6XQE|1|2A|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XQE_189 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.0827

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6XQE|1|2A|G|674
6XQE|1|2A|A|675
6XQE|1|2A|A|676
6XQE|1|2A|A|677
6XQE|1|2A|C|678
*
6XQE|1|2A|G|799
6XQE|1|2A|A|800
6XQE|1|2A|G|801
6XQE|1|2A|A|802
6XQE|1|2A|U|803
6XQE|1|2A|A|804
6XQE|1|2A|G|805
6XQE|1|2A|C|806

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2F

50S ribosomal protein L4

Chain 2P

50S ribosomal protein L15