IL_6XQE_228

3D structure

PDB id

6XQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UAA-mRNA, and deacylated P-site tRNA at 3.00A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAGAAG*UGGUG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XQE_228 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.3043

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_67427.1

Basepair signature

cWW-cWW-L-R-L-R-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6XQE|1|2A|C|1468
6XQE|1|2A|A|1469
6XQE|1|2A|G|1470
6XQE|1|2A|A|1471
6XQE|1|2A|A|1472
6XQE|1|2A|G|1473
*
6XQE|1|2A|U|1518
6XQE|1|2A|G|1519
6XQE|1|2A|G|1520
6XQE|1|2A|U|1523
6XQE|1|2A|G|1524

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains