IL_6XQE_249

3D structure

PDB id

6XQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UAA-mRNA, and deacylated P-site tRNA at 3.00A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

6XQE|1|2A|A|2439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XQE_249 not in the Motif Atlas

Homologous match to IL_4WF9_081

Geometric discrepancy: 0.1172

The information below is about IL_4WF9_081

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

6XQE|1|2A|G|2070
6XQE|1|2A|A|2071
*
6XQE|1|2A|U|2438
6XQE|1|2A|A|2439
6XQE|1|2A|C|2440
6XQE|1|2A|C|2441

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2x

Transfer RNA; tRNA