IL_6XQE_273

3D structure

PDB id

6XQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UAA-mRNA, and deacylated P-site tRNA at 3.00A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUUCC*GGUAG

Length

10 nucleotides

Bulged bases

6XQE|1|2A|U|2689, 6XQE|1|2A|C|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XQE_273 not in the Motif Atlas

Homologous match to IL_7RQB_105

Geometric discrepancy: 0.0852

The information below is about IL_7RQB_105

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_08296.3

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

6XQE|1|2A|U|2687
6XQE|1|2A|U|2688
6XQE|1|2A|U|2689
6XQE|1|2A|C|2690
6XQE|1|2A|C|2691
*
6XQE|1|2A|G|2718
6XQE|1|2A|G|2719
6XQE|1|2A|U|2720
6XQE|1|2A|A|2721
6XQE|1|2A|G|2722

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2R

50S ribosomal protein L17

Chain 2T

50S ribosomal protein L19