IL_6XQE_293

3D structure

PDB id

6XQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UAA-mRNA, and deacylated P-site tRNA at 3.00A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GACAAC*GCUAAUC

Length

13 nucleotides

Bulged bases

6XQE|1|2a|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XQE_293 not in the Motif Atlas

Homologous match to IL_4LFB_009

Geometric discrepancy: 0.11

The information below is about IL_4LFB_009

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_12745.1

Basepair signature

cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

1

Unit IDs

6XQE|1|2a|G|148
6XQE|1|2a|A|149
6XQE|1|2a|C|150
6XQE|1|2a|A|151
6XQE|1|2a|A|152
6XQE|1|2a|C|153
*
6XQE|1|2a|G|168
6XQE|1|2a|C|169
6XQE|1|2a|U|170
6XQE|1|2a|A|171
6XQE|1|2a|A|172
6XQE|1|2a|U|173
6XQE|1|2a|C|174

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2t

30S ribosomal protein S20