IL_6XQE_310

3D structure

PDB id

6XQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UAA-mRNA, and deacylated P-site tRNA at 3.00A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGAAAGAC*GGGGAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XQE_310 not in the Motif Atlas

Homologous match to IL_4LFB_026

Geometric discrepancy: 0.2526

The information below is about IL_4LFB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_78349.3

Basepair signature

cWW-L-R-L-R-L-R-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

6XQE|1|2a|U|605
6XQE|1|2a|G|606
6XQE|1|2a|A|607
6XQE|1|2a|A|608
6XQE|1|2a|A|609
6XQE|1|2a|G|610
6XQE|1|2a|A|611
6XQE|1|2a|C|612
*
6XQE|1|2a|G|628
6XQE|1|2a|G|629
6XQE|1|2a|G|630
6XQE|1|2a|G|631
6XQE|1|2a|A|632
6XQE|1|2a|G|633

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2d

30S ribosomal protein S4

Chain 2h

30S ribosomal protein S8

Chain 2p

30S ribosomal protein S16