IL_6XQE_334

3D structure

PDB id

6XQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UAA-mRNA, and deacylated P-site tRNA at 3.00A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCAC*GGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XQE_334 not in the Motif Atlas

Geometric match to IL_4V88_471

Geometric discrepancy: 0.3274

The information below is about IL_4V88_471

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

6XQE|1|2a|C|1259
6XQE|1|2a|C|1260
6XQE|1|2a|A|1261
6XQE|1|2a|C|1262
*
6XQE|1|2a|G|1273
6XQE|1|2a|G|1274
6XQE|1|2a|A|1275
6XQE|1|2a|G|1276

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2u

30S ribosomal protein Thx