IL_6XQE_341

3D structure

PDB id

6XQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UAA-mRNA, and deacylated P-site tRNA at 3.00A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAAG*CGAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XQE_341 not in the Motif Atlas

Homologous match to IL_6CZR_170

Geometric discrepancy: 0.1302

The information below is about IL_6CZR_170

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_77691.4

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

9

Unit IDs

6XQE|1|2a|C|1431
6XQE|1|2a|G|1432
6XQE|1|2a|A|1433
6XQE|1|2a|A|1434
6XQE|1|2a|G|1435
*
6XQE|1|2a|C|1466
6XQE|1|2a|G|1467
6XQE|1|2a|A|1468
6XQE|1|2a|G|1469

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2T

50S ribosomal protein L19

Chain 2t

30S ribosomal protein S20