IL_6XUS_002

3D structure

PDB id

6XUS (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNA dodecamer with a 6-hydrazino-2-aminopurine modified base

Experimental method

X-RAY DIFFRACTION

Resolution

1.1 Å

Loop

Sequence

A(O2Z)UU*A(O2Z)UU

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XUS_002 not in the Motif Atlas

Geometric match to IL_4K27_001

Geometric discrepancy: 0.1343

The information below is about IL_4K27_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6XUS|1|A|A|1005
6XUS|1|A|O2Z|1006
6XUS|1|A|U|1007
6XUS|1|A|U|1008
*
6XUS|1|A|A|1005||||2_656
6XUS|1|A|O2Z|1006||||2_656
6XUS|1|A|U|1007||||2_656
6XUS|1|A|U|1008||||2_656

Current chains

Chain A

RNA dodecamer with a 6-hydrazino-2-aminopurine modified base

Nearby chains