IL_6XYW_004
3D structure
- PDB id
- 6XYW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the plant mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.86 Å
Loop
- Sequence
- GGGAG*CUGUGAUC
- Length
- 13 nucleotides
- Bulged bases
- 6XYW|1|1|U|95
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XYW_004 not in the Motif Atlas
- Homologous match to IL_4WF9_004
- Geometric discrepancy: 0.2063
- The information below is about IL_4WF9_004
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_71972.1
- Basepair signature
- cWW-tSS-tSH-L-R-tHS-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
6XYW|1|1|G|80
6XYW|1|1|G|81
6XYW|1|1|G|82
6XYW|1|1|A|83
6XYW|1|1|G|84
*
6XYW|1|1|C|92
6XYW|1|1|U|93
6XYW|1|1|G|94
6XYW|1|1|U|95
6XYW|1|1|G|96
6XYW|1|1|A|97
6XYW|1|1|U|98
6XYW|1|1|C|99
Current chains
- Chain 1
- RNA (2842-MER)
Nearby chains
- Chain AG
- At5g40080
- Chain Au
- 50S ribosomal protein L24
- Chain Ay
- At1g07830/F24B9_7
Coloring options: