IL_6XYW_014

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

CCU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_014 not in the Motif Atlas

Geometric match to IL_7A0S_011

Geometric discrepancy: 0.2071

The information below is about IL_7A0S_011

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

79

Unit IDs

6XYW|1|1|C|714
6XYW|1|1|C|715
6XYW|1|1|U|716
*
6XYW|1|1|A|725
6XYW|1|1|U|726
6XYW|1|1|G|727

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain Ad

50S ribosomal protein L4

Chain Al

Ribosomal protein L18e/L15 superfamily protein

Chain Aq

50S ribosomal protein L20

Chain Ar

50S ribosomal protein L21, mitochondrial