IL_6XYW_017

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

GAAAC*GAUAUAGC

Length

13 nucleotides

Bulged bases

6XYW|1|1|U|945, 6XYW|1|1|G|949

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_017 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.1602

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6XYW|1|1|G|817
6XYW|1|1|A|818
6XYW|1|1|A|819
6XYW|1|1|A|820
6XYW|1|1|C|821
*
6XYW|1|1|G|943
6XYW|1|1|A|944
6XYW|1|1|U|945
6XYW|1|1|A|946
6XYW|1|1|U|947
6XYW|1|1|A|948
6XYW|1|1|G|949
6XYW|1|1|C|950

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain Ad

50S ribosomal protein L4

Chain Al

Ribosomal protein L18e/L15 superfamily protein