IL_6XYW_024

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

GGG*CAACC

Length

8 nucleotides

Bulged bases

6XYW|1|1|G|920, 6XYW|1|1|A|932, 6XYW|1|1|A|933, 6XYW|1|1|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_024 not in the Motif Atlas

Homologous match to IL_5J7L_265

Geometric discrepancy: 0.1012

The information below is about IL_5J7L_265

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_06549.2

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

6XYW|1|1|G|919
6XYW|1|1|G|920
6XYW|1|1|G|921
*
6XYW|1|1|C|931
6XYW|1|1|A|932
6XYW|1|1|A|933
6XYW|1|1|C|934
6XYW|1|1|C|935

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain Aa

60S ribosomal protein L2, mitochondrial

Chain Ad

50S ribosomal protein L4

Chain As

AT1G52370 protein