IL_6XYW_025

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_025 not in the Motif Atlas

Homologous match to IL_5J7L_266

Geometric discrepancy: 0.2271

The information below is about IL_5J7L_266

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

6XYW|1|1|C|981
6XYW|1|1|G|982
*
6XYW|1|1|C|1087
6XYW|1|1|A|1088
6XYW|1|1|G|1089

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain AD

Ribosomal protein L35

Chain Al

Ribosomal protein L18e/L15 superfamily protein