IL_6XYW_030
3D structure
- PDB id
- 6XYW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the plant mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.86 Å
Loop
- Sequence
- GAGGUAG*CGAAUAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XYW_030 not in the Motif Atlas
- Homologous match to IL_5J7L_270
- Geometric discrepancy: 0.1713
- The information below is about IL_5J7L_270
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_29198.2
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
6XYW|1|1|G|1000
6XYW|1|1|A|1001
6XYW|1|1|G|1002
6XYW|1|1|G|1003
6XYW|1|1|U|1004
6XYW|1|1|A|1005
6XYW|1|1|G|1006
*
6XYW|1|1|C|1062
6XYW|1|1|G|1063
6XYW|1|1|A|1064
6XYW|1|1|A|1065
6XYW|1|1|U|1066
6XYW|1|1|A|1067
6XYW|1|1|C|1068
Current chains
- Chain 1
- RNA (2842-MER)
Nearby chains
- Chain 3
- RNA (118-MER)
- Chain Am
- 60S ribosomal protein L16, mitochondrial
- Chain Aw
- 50S ribosomal protein L27
- Chain Az
- At5g55140
Coloring options: