IL_6XYW_031

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

GA*UCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_031 not in the Motif Atlas

Geometric match to IL_7A0S_028

Geometric discrepancy: 0.1794

The information below is about IL_7A0S_028

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

6XYW|1|1|G|1006
6XYW|1|1|A|1007
*
6XYW|1|1|U|1060
6XYW|1|1|C|1061
6XYW|1|1|C|1062

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain 3

RNA (118-MER)

Chain Am

60S ribosomal protein L16, mitochondrial

Chain Aw

50S ribosomal protein L27