IL_6XYW_035

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

GGUG*CUUAC

Length

9 nucleotides

Bulged bases

6XYW|1|1|A|1043

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_035 not in the Motif Atlas

Geometric match to IL_7A0S_040

Geometric discrepancy: 0.3926

The information below is about IL_7A0S_040

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6XYW|1|1|G|1024
6XYW|1|1|G|1025
6XYW|1|1|U|1026
6XYW|1|1|G|1027
*
6XYW|1|1|C|1040
6XYW|1|1|U|1041
6XYW|1|1|U|1042
6XYW|1|1|A|1043
6XYW|1|1|C|1044

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain Am

60S ribosomal protein L16, mitochondrial

Chain Av

Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein