IL_6XYW_043

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

GAAG*CAC

Length

7 nucleotides

Bulged bases

6XYW|1|1|A|1182

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_043 not in the Motif Atlas

Homologous match to IL_7A0S_038

Geometric discrepancy: 0.228

The information below is about IL_7A0S_038

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_76400.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

6XYW|1|1|G|1180
6XYW|1|1|A|1181
6XYW|1|1|A|1182
6XYW|1|1|G|1183
*
6XYW|1|1|C|1270
6XYW|1|1|A|1271
6XYW|1|1|C|1272

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain AE

Ribosomal protein

Chain Am

60S ribosomal protein L16, mitochondrial