IL_6XYW_044

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

UGA*UGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_044 not in the Motif Atlas

Geometric match to IL_5UNE_004

Geometric discrepancy: 0.2583

The information below is about IL_5UNE_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

6XYW|1|1|U|1184
6XYW|1|1|G|1185
6XYW|1|1|A|1186
*
6XYW|1|1|U|1267
6XYW|1|1|G|1268
6XYW|1|1|G|1269

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain Aj

At1g01640

Chain Am

60S ribosomal protein L16, mitochondrial

Chain Av

Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein