IL_6XYW_057

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

GUUCA*UAC

Length

8 nucleotides

Bulged bases

6XYW|1|1|A|1489

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_057 not in the Motif Atlas

Homologous match to IL_5J7L_291

Geometric discrepancy: 0.2873

The information below is about IL_5J7L_291

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

6XYW|1|1|G|1476
6XYW|1|1|U|1477
6XYW|1|1|U|1478
6XYW|1|1|C|1479
6XYW|1|1|A|1480
*
6XYW|1|1|U|1488
6XYW|1|1|A|1489
6XYW|1|1|C|1490

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain As

AT1G52370 protein

Chain At

At4g39880