IL_6XYW_058
3D structure
- PDB id
- 6XYW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the plant mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.86 Å
Loop
- Sequence
- CCUAAG*CCGAUG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XYW_058 not in the Motif Atlas
- Geometric match to IL_5J7L_350
- Geometric discrepancy: 0.2739
- The information below is about IL_5J7L_350
- Detailed Annotation
- UAA/GAN with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_49767.8
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
6XYW|1|1|C|1507
6XYW|1|1|C|1508
6XYW|1|1|U|1509
6XYW|1|1|A|1510
6XYW|1|1|A|1511
6XYW|1|1|G|1512
*
6XYW|1|1|C|1535
6XYW|1|1|C|1536
6XYW|1|1|G|1537
6XYW|1|1|A|1538
6XYW|1|1|U|1539
6XYW|1|1|G|1540
Current chains
- Chain 1
- RNA (2842-MER)
Nearby chains
- Chain AG
- At5g40080
- Chain AN
- At3g51010
- Chain Aa
- 60S ribosomal protein L2, mitochondrial
Coloring options: