IL_6XYW_062

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

UUGAGU*AAGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_062 not in the Motif Atlas

Geometric match to IL_4LFB_030

Geometric discrepancy: 0.2878

The information below is about IL_4LFB_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04668.2

Basepair signature

cWW-cWW-cWW-L-R-L-R-cWW

Number of instances in this motif group

8

Unit IDs

6XYW|1|1|U|1667
6XYW|1|1|U|1668
6XYW|1|1|G|1669
6XYW|1|1|A|1670
6XYW|1|1|G|1671
6XYW|1|1|U|1672
*
6XYW|1|1|A|1871
6XYW|1|1|A|1872
6XYW|1|1|G|1873
6XYW|1|1|A|1874
6XYW|1|1|A|1875
6XYW|1|1|G|1876

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain AO

Pentatricopeptide repeat-containing protein At1g60770