IL_6XYW_071

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

6XYW|1|1|G|2034

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_071 not in the Motif Atlas

Geometric match to IL_4V9F_063

Geometric discrepancy: 0.1409

The information below is about IL_4V9F_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_20700.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

10

Unit IDs

6XYW|1|1|C|2021
6XYW|1|1|G|2022
6XYW|1|1|U|2023
6XYW|1|1|A|2024
6XYW|1|1|A|2025
6XYW|1|1|C|2026
*
6XYW|1|1|G|2031
6XYW|1|1|G|2032
6XYW|1|1|A|2033
6XYW|1|1|G|2034
6XYW|1|1|A|2035
6XYW|1|1|A|2036
6XYW|1|1|G|2037

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA