IL_6XYW_075

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

CCGG*CG

Length

6 nucleotides

Bulged bases

6XYW|1|1|C|2155

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_075 not in the Motif Atlas

Homologous match to IL_5J7L_314

Geometric discrepancy: 0.1937

The information below is about IL_5J7L_314

Detailed Annotation

Minor groove platform, major groove intercalation

Broad Annotation

Minor groove platform, major groove intercalation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

6XYW|1|1|C|2154
6XYW|1|1|C|2155
6XYW|1|1|G|2156
6XYW|1|1|G|2157
*
6XYW|1|1|C|2213
6XYW|1|1|G|2214

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain Ab

Expressed protein