IL_6XYW_080

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

GC*GCAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_080 not in the Motif Atlas

Geometric match to IL_7A0S_071

Geometric discrepancy: 0.1214

The information below is about IL_7A0S_071

Detailed Annotation

Bulged stacked bases

Broad Annotation

Bulged stacked bases

Motif group

IL_24886.2

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

12

Unit IDs

6XYW|1|1|G|2244
6XYW|1|1|C|2245
*
6XYW|1|1|G|2275
6XYW|1|1|C|2276
6XYW|1|1|A|2277
6XYW|1|1|C|2278

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain BB

mS38