IL_6XYW_085

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

6XYW|1|1|G|2540

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_085 not in the Motif Atlas

Homologous match to IL_7A0S_077

Geometric discrepancy: 0.1491

The information below is about IL_7A0S_077

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_87316.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6XYW|1|1|U|2392
6XYW|1|1|A|2393
6XYW|1|1|G|2394
*
6XYW|1|1|U|2538
6XYW|1|1|G|2539
6XYW|1|1|G|2540
6XYW|1|1|G|2541

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain Ab

Expressed protein

Chain Ax

AT4g31460/F3L17_30