IL_6XYW_086

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

GAC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_086 not in the Motif Atlas

Geometric match to IL_4P3T_001

Geometric discrepancy: 0.1552

The information below is about IL_4P3T_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

6XYW|1|1|G|2404
6XYW|1|1|A|2405
6XYW|1|1|C|2406
*
6XYW|1|1|G|2490
6XYW|1|1|C|2491
6XYW|1|1|C|2492

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain Ag

Ribosomal protein L9/RNase H1

Chain Ax

AT4g31460/F3L17_30