IL_6XYW_090

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

GGAGG*CCAAUCCUGAAAGAC

Length

20 nucleotides

Bulged bases

6XYW|1|1|A|2459, 6XYW|1|1|G|2468

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_090 not in the Motif Atlas

Homologous match to IL_5J7L_329

Geometric discrepancy: 0.3893

The information below is about IL_5J7L_329

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_87290.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

Number of instances in this motif group

1

Unit IDs

6XYW|1|1|G|2435
6XYW|1|1|G|2436
6XYW|1|1|A|2437
6XYW|1|1|G|2438
6XYW|1|1|G|2439
*
6XYW|1|1|C|2456
6XYW|1|1|C|2457
6XYW|1|1|A|2458
6XYW|1|1|A|2459
6XYW|1|1|U|2460
6XYW|1|1|C|2461
6XYW|1|1|C|2462
6XYW|1|1|U|2463
6XYW|1|1|G|2464
6XYW|1|1|A|2465
6XYW|1|1|A|2466
6XYW|1|1|A|2467
6XYW|1|1|G|2468
6XYW|1|1|A|2469
6XYW|1|1|C|2470

Current chains

Chain 1

RNA (2842-MER)

Nearby chains