IL_6XYW_091

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

CAA*UCGUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_091 not in the Motif Atlas

Homologous match to IL_5J7L_332

Geometric discrepancy: 0.4305

The information below is about IL_5J7L_332

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61476.2

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

7

Unit IDs

6XYW|1|1|C|2599
6XYW|1|1|A|2600
6XYW|1|1|A|2601
*
6XYW|1|1|U|2615
6XYW|1|1|C|2616
6XYW|1|1|G|2617
6XYW|1|1|U|2618
6XYW|1|1|G|2619

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain 3

RNA (118-MER)

Chain Aw

50S ribosomal protein L27