IL_6XYW_101

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

CA*UACG

Length

6 nucleotides

Bulged bases

6XYW|1|1|A|2870, 6XYW|1|1|C|2871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_101 not in the Motif Atlas

Geometric match to IL_7A0S_090

Geometric discrepancy: 0.1713

The information below is about IL_7A0S_090

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.2

Basepair signature

cWW-cWW

Number of instances in this motif group

24

Unit IDs

6XYW|1|1|C|2810
6XYW|1|1|A|2811
*
6XYW|1|1|U|2869
6XYW|1|1|A|2870
6XYW|1|1|C|2871
6XYW|1|1|G|2872

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain Ac

50S ribosomal protein L3-2, mitochondrial

Chain Aj

At1g01640