IL_6XYW_107

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

UGUAC*GGCAG

Length

10 nucleotides

Bulged bases

6XYW|1|1|U|2991, 6XYW|1|1|A|2992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_107 not in the Motif Atlas

Homologous match to IL_7RQB_105

Geometric discrepancy: 0.2489

The information below is about IL_7RQB_105

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_08296.3

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

6XYW|1|1|U|2989
6XYW|1|1|G|2990
6XYW|1|1|U|2991
6XYW|1|1|A|2992
6XYW|1|1|C|2993
*
6XYW|1|1|G|3020
6XYW|1|1|G|3021
6XYW|1|1|C|3022
6XYW|1|1|A|3023
6XYW|1|1|G|3024

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain Ac

50S ribosomal protein L3-2, mitochondrial

Chain An

At5g09770

Chain Ap

At1g24240/F3I6_17