IL_6XYW_108

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

UU*AGCG

Length

6 nucleotides

Bulged bases

6XYW|1|1|G|3014, 6XYW|1|1|C|3015

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_108 not in the Motif Atlas

Homologous match to IL_4WF9_103

Geometric discrepancy: 0.1786

The information below is about IL_4WF9_103

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.2

Basepair signature

cWW-cWW

Number of instances in this motif group

24

Unit IDs

6XYW|1|1|U|2997
6XYW|1|1|U|2998
*
6XYW|1|1|A|3013
6XYW|1|1|G|3014
6XYW|1|1|C|3015
6XYW|1|1|G|3016

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain An

At5g09770

Chain Ap

At1g24240/F3I6_17