IL_6XYW_118

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

CGAA*UG

Length

6 nucleotides

Bulged bases

6XYW|1|2|G|72, 6XYW|1|2|A|73

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_118 not in the Motif Atlas

Homologous match to IL_4LFB_005

Geometric discrepancy: 0.2779

The information below is about IL_4LFB_005

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

6XYW|1|2|C|71
6XYW|1|2|G|72
6XYW|1|2|A|73
6XYW|1|2|A|74
*
6XYW|1|2|U|167
6XYW|1|2|G|168

Current chains

Chain 2

RNA (1743-MER)

Nearby chains

Chain Bv

AT5g49210/K21P3_8

Chain By

28S ribosomal S34 protein