IL_6XYW_121

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

GCAG*CUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_121 not in the Motif Atlas

Geometric match to IL_4N0T_004

Geometric discrepancy: 0.3594

The information below is about IL_4N0T_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32983.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

6XYW|1|2|G|95
6XYW|1|2|C|96
6XYW|1|2|A|97
6XYW|1|2|G|98
*
6XYW|1|2|C|111
6XYW|1|2|U|112
6XYW|1|2|C|113

Current chains

Chain 2

RNA (1743-MER)

Nearby chains

Chain BI

rPPR*

Chain BJ

rPPR*

Chain By

28S ribosomal S34 protein