IL_6XYW_123

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

GAAU*AGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_123 not in the Motif Atlas

Homologous match to IL_5J7L_009

Geometric discrepancy: 0.2178

The information below is about IL_5J7L_009

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

6XYW|1|2|G|192
6XYW|1|2|A|193
6XYW|1|2|A|194
6XYW|1|2|U|195
*
6XYW|1|2|A|250
6XYW|1|2|G|251
6XYW|1|2|C|252

Current chains

Chain 2

RNA (1743-MER)

Nearby chains

Chain Bo

30S ribosomal protein S16-2, chloroplastic/mitochondrial

Chain Bp

Nucleic acid-binding, OB-fold-like protein