IL_6XYW_127

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

GG*UGAUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_127 not in the Motif Atlas

Homologous match to IL_4LFB_013

Geometric discrepancy: 0.2554

The information below is about IL_4LFB_013

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_06671.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

6XYW|1|2|G|311
6XYW|1|2|G|312
*
6XYW|1|2|U|323
6XYW|1|2|G|324
6XYW|1|2|A|325
6XYW|1|2|U|326
6XYW|1|2|C|327

Current chains

Chain 2

RNA (1743-MER)

Nearby chains

Chain Bk

Ribosomal protein S12, mitochondrial

Chain Bo

30S ribosomal protein S16-2, chloroplastic/mitochondrial