IL_6XYW_129

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

ACAAU*AU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_129 not in the Motif Atlas

Geometric match to IL_5J7L_018

Geometric discrepancy: 0.2005

The information below is about IL_5J7L_018

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

6XYW|1|2|A|390
6XYW|1|2|C|391
6XYW|1|2|A|392
6XYW|1|2|A|393
6XYW|1|2|U|394
*
6XYW|1|2|A|407
6XYW|1|2|U|408

Current chains

Chain 2

RNA (1743-MER)

Nearby chains

Chain BC

At5g26800

Chain Bo

30S ribosomal protein S16-2, chloroplastic/mitochondrial