IL_6XYW_134

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

GUGCCAG*CGGUAAAAC

Length

16 nucleotides

Bulged bases

6XYW|1|2|A|529, 6XYW|1|2|A|531

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_134 not in the Motif Atlas

Homologous match to IL_4LFB_021

Geometric discrepancy: 0.417

The information below is about IL_4LFB_021

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_52042.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6XYW|1|2|G|512
6XYW|1|2|U|513
6XYW|1|2|G|514
6XYW|1|2|C|515
6XYW|1|2|C|516
6XYW|1|2|A|517
6XYW|1|2|G|518
*
6XYW|1|2|C|525
6XYW|1|2|G|526
6XYW|1|2|G|527
6XYW|1|2|U|528
6XYW|1|2|A|529
6XYW|1|2|A|530
6XYW|1|2|A|531
6XYW|1|2|A|532
6XYW|1|2|C|533

Current chains

Chain 2

RNA (1743-MER)

Nearby chains

Chain Bb

Ribosomal protein S3, mitochondrial

Chain Bk

Ribosomal protein S12, mitochondrial

Chain Bx

37S ribosomal protein S27