IL_6XYW_138

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

GUU*GAAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_138 not in the Motif Atlas

Geometric match to IL_6DME_002

Geometric discrepancy: 0.38

The information below is about IL_6DME_002

Detailed Annotation

8-nt loop receptor

Broad Annotation

Loop-receptor motif

Motif group

IL_70784.1

Basepair signature

cWW-cWW-cSH-cWW-L

Number of instances in this motif group

7

Unit IDs

6XYW|1|2|G|594
6XYW|1|2|U|595
6XYW|1|2|U|596
*
6XYW|1|2|G|634
6XYW|1|2|A|635
6XYW|1|2|A|636
6XYW|1|2|A|637
6XYW|1|2|C|638

Current chains

Chain 2

RNA (1743-MER)

Nearby chains

Chain Bg

40S ribosomal protein S15a-5

Chain Bp

Nucleic acid-binding, OB-fold-like protein

Chain Bv

AT5g49210/K21P3_8