IL_6XYW_142

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

CAGAGG*CUGGG

Length

11 nucleotides

Bulged bases

6XYW|1|2|A|660

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_142 not in the Motif Atlas

Geometric match to IL_7VYX_008

Geometric discrepancy: 0.3886

The information below is about IL_7VYX_008

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

6XYW|1|2|C|657
6XYW|1|2|A|658
6XYW|1|2|G|659
6XYW|1|2|A|660
6XYW|1|2|G|661
6XYW|1|2|G|662
*
6XYW|1|2|C|734
6XYW|1|2|U|735
6XYW|1|2|G|736
6XYW|1|2|G|737
6XYW|1|2|G|738

Current chains

Chain 2

RNA (1743-MER)

Nearby chains

Chain Be

Translation elongation factor EF1B/ribosomal protein S6 family protein

Chain Bn

At1g15810/F7H2_23

Chain Bq

F10K1.8 protein