IL_6XYW_144

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

GUGGAG*UACAGAUCU

Length

15 nucleotides

Bulged bases

6XYW|1|2|A|697

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_144 not in the Motif Atlas

Homologous match to IL_4LFB_031

Geometric discrepancy: 0.2975

The information below is about IL_4LFB_031

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_95727.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

1

Unit IDs

6XYW|1|2|G|678
6XYW|1|2|U|679
6XYW|1|2|G|680
6XYW|1|2|G|681
6XYW|1|2|A|682
6XYW|1|2|G|683
*
6XYW|1|2|U|694
6XYW|1|2|A|695
6XYW|1|2|C|696
6XYW|1|2|A|697
6XYW|1|2|G|698
6XYW|1|2|A|699
6XYW|1|2|U|700
6XYW|1|2|C|701
6XYW|1|2|U|702

Current chains

Chain 2

RNA (1743-MER)

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain Bj

Probable ribosomal protein S11, mitochondrial